Unable to launch stlearn interactively #18
Description
Hi,
I created a conda environment for stlearn as per the instructions in https://stlearn.readthedocs.io/en/latest/installation.html. However, I am not able to launch stlearn. Can you please help me understanding the issue? Thanks
Below are the steps followed & the error msg received -
(base) ria@ip-192-168-204-132:/data_disk/Ria/Spatial_Omics$ conda create -n stlearn python=3.8
Collecting package metadata (current_repodata.json): done
Solving environment: done
==> WARNING: A newer version of conda exists. <==
current version: 22.9.0
latest version: 23.7.4
Please update conda by running
$ conda update -n base -c defaults conda
Package Plan
environment location: /data_disk/Bulk_TCR_Seq/anaconda3/envs/stlearn
added / updated specs:
- python=3.8
The following packages will be downloaded:
package | build
---------------------------|-----------------
ca-certificates-2023.08.22 | h06a4308_0 123 KB
libffi-3.4.4 | h6a678d5_0 142 KB
openssl-3.0.10 | h7f8727e_2 5.2 MB
pip-23.2.1 | py38h06a4308_0 2.6 MB
python-3.8.18 | h955ad1f_0 25.3 MB
setuptools-68.0.0 | py38h06a4308_0 927 KB
wheel-0.38.4 | py38h06a4308_0 63 KB
xz-5.4.2 | h5eee18b_0 642 KB
------------------------------------------------------------
Total: 34.9 MB
The following NEW packages will be INSTALLED:
_libgcc_mutex pkgs/main/linux-64::_libgcc_mutex-0.1-main None
_openmp_mutex pkgs/main/linux-64::_openmp_mutex-5.1-1_gnu None
ca-certificates pkgs/main/linux-64::ca-certificates-2023.08.22-h06a4308_0 None
ld_impl_linux-64 pkgs/main/linux-64::ld_impl_linux-64-2.38-h1181459_1 None
libffi pkgs/main/linux-64::libffi-3.4.4-h6a678d5_0 None
libgcc-ng pkgs/main/linux-64::libgcc-ng-11.2.0-h1234567_1 None
libgomp pkgs/main/linux-64::libgomp-11.2.0-h1234567_1 None
libstdcxx-ng pkgs/main/linux-64::libstdcxx-ng-11.2.0-h1234567_1 None
ncurses pkgs/main/linux-64::ncurses-6.4-h6a678d5_0 None
openssl pkgs/main/linux-64::openssl-3.0.10-h7f8727e_2 None
pip pkgs/main/linux-64::pip-23.2.1-py38h06a4308_0 None
python pkgs/main/linux-64::python-3.8.18-h955ad1f_0 None
readline pkgs/main/linux-64::readline-8.2-h5eee18b_0 None
setuptools pkgs/main/linux-64::setuptools-68.0.0-py38h06a4308_0 None
sqlite pkgs/main/linux-64::sqlite-3.41.2-h5eee18b_0 None
tk pkgs/main/linux-64::tk-8.6.12-h1ccaba5_0 None
wheel pkgs/main/linux-64::wheel-0.38.4-py38h06a4308_0 None
xz pkgs/main/linux-64::xz-5.4.2-h5eee18b_0 None
zlib pkgs/main/linux-64::zlib-1.2.13-h5eee18b_0 None
Proceed ([y]/n)? y
Downloading and Extracting Packages
libffi-3.4.4 | 142 KB | ############################################################## | 100%
python-3.8.18 | 25.3 MB | ############################################################## | 100%
pip-23.2.1 | 2.6 MB | ############################################################## | 100%
wheel-0.38.4 | 63 KB | ############################################################## | 100%
ca-certificates-2023 | 123 KB | ############################################################## | 100%
openssl-3.0.10 | 5.2 MB | ############################################################## | 100%
xz-5.4.2 | 642 KB | ############################################################## | 100%
setuptools-68.0.0 | 927 KB | ############################################################## | 100%
Preparing transaction: done
Verifying transaction: done
Executing transaction: done
To activate this environment, use
$ conda activate stlearn
To deactivate an active environment, use
$ conda deactivate
Retrieving notices: ...working... done
(base) ria@ip-192-168-204-132:/data_disk/Ria/Spatial_Omics$ conda activate stlearn
(stlearn) ria@ip-192-168-204-132:/data_disk/Ria/Spatial_Omics$ stlearn launch
Command 'stlearn' not found, did you mean:
command 'tslearn' from deb gcin
Try: apt install