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@@ -7,14 +7,14 @@ via public API nor public download, but it can be downloaded as a zip file after
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## Features
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This module takes an Ictio_Basic zip file from ictio.org and performs the following tasks on it:
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- unzips its contents to a secure temporary folder
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- flattens decompressed file and folder structure to make file paths more predictable
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- autodetects the name of the observations file, which has a changing name based on the db generation date
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- verifies the existence of "taxa" file, containing a taxonomy of species in Amazon basin
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- loads observations and taxa files into dataframes
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- combines information from both dataframes into one, so observations are complemented with species data
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- sanitizes and curates the structure and the values
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- and returns a curated dataframe with all relevant data ready to be analysed
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1. unzips its contents to a secure temporary folder
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2. flattens decompressed file and folder structure to make file paths more predictable
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3. autodetects the name of the observations file, which has a changing name based on the db generation date
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4. verifies the existence of "taxa" file, containing a taxonomy of species in Amazon basin
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5. loads observations and taxa files into dataframes
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6. combines information from both dataframes into one, so observations are complemented with species data
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7. sanitizes and curates the structure and the values
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8. and returns a curated dataframe with all relevant data ready to be analysed
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The structure of the dataframe is as follows:
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