Merge remote-tracking branch 'origin/cudmore-dev' into s-dev #77

	name: PyTest

	on:
	pull_request:
	branches: [main]
	push:

	permissions:
	contents: read

	jobs:
	test:
	runs-on: ubuntu-latest
	strategy:
	matrix:
	platform: [ubuntu-latest, windows-latest, macos-latest]
	python-version: ["3.11"]
	steps:
	- uses: actions/checkout@v3
	- name: Set up Python ${{ matrix.python-version }}
	uses: actions/setup-python@v4
	with:
	python-version: ${{ matrix.python-version }}
	cache: pip
	cache-dependency-path: setup.py
	- name: Install dependencies
	run: \|
	pip install '.[tests]'

	- name: Run flake8
	run: \|
	flake8 ./mapmanagercore --count --select=E9,F63,F7,F82 --show-source --statistics

	- name: Test and generate coverage report
	run: \|
	# exlude anything that requires large data (it is not included in PyPi)
	# pytest --cov=./tests --cov-report=xml --ignore=tests/test_gen_example_notebook.py
	pytest --cov=./tests --cov-report=xml --ignore=tests/test_gen_example_notebook.py

	- name: Upload coverage reports to Codecov
	uses: codecov/codecov-action@v4.0.1
	with:
	token: ${{ secrets.CODECOV_TOKEN }}

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