-
Notifications
You must be signed in to change notification settings - Fork 19
Open
Description
Running with 12 threads following basic usage example in README.md
Traceback (most recent call last):
File "/rsrch5/home/epi/bhattacharya_lab/software/longreadapps/TranscriptClean_venv/bin/transcriptclean", line 33, in <module>
sys.exit(load_entry_point('TranscriptClean', 'console_scripts', 'transcriptclean')())
File "/rsrch5/home/epi/bhattacharya_lab/software/longreadapps/TranscriptClean_venv/TranscriptClean-master/TranscriptClean/TranscriptClean.py", line 37, in main
header, sam_chroms, sam_chunks = split_SAM(sam_file, n_threads)
File "/rsrch5/home/epi/bhattacharya_lab/software/longreadapps/TranscriptClean_venv/TranscriptClean-master/TranscriptClean/TranscriptClean.py", line 535, in split_SAM
chrom = line.split("\t")[2]
KeyboardInterrupt
Terminated
Metadata
Metadata
Assignees
Labels
No labels