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lib: update COSMIC indexer, #TASK-5576, #TASK-5564
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  • cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant

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cellbase-lib/src/main/java/org/opencb/cellbase/lib/builders/clinical/variant/CosmicIndexer.java

Lines changed: 1 addition & 1 deletion
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@@ -50,7 +50,7 @@ public void index() throws CellBaseException {
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try {
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logger.info("Parsing cosmic file ...");
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CosmicIndexerCallback callback = new CosmicIndexerCallback(rdb, this);
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CosmicParser101.parse(cosmicGenomeScreensMutantFilePath, cosmicGenomeScreensMutantFilePath, version, EtlCommons.COSMIC_DATA,
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CosmicParser101.parse(cosmicGenomeScreensMutantFilePath, cosmicClassificationFilePath, version, EtlCommons.COSMIC_DATA,
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assembly, callback);
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} catch (IOException | FileFormatException e) {
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throw new CellBaseException("Error parsing COSMIC files: " + cosmicGenomeScreensMutantFilePath + ", "

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