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@AndersenLab

Andersen Lab

Johns Hopkins University

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    HTML 4 3

Repositories

Showing 10 of 196 repositories
  • ToxinGWAS_Manuscript Public

    Repository for Manuscript

    AndersenLab/ToxinGWAS_Manuscript’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 9, 2026
  • ce_cb_ct_betatubulin Public
    AndersenLab/ce_cb_ct_betatubulin’s past year of commit activity
    PostScript 0 0 0 0 Updated Jan 9, 2026
  • NemaScan Public

    GWA Mapping and Simulation with C. elegans, C. tropicalis, and C. briggsae

    AndersenLab/NemaScan’s past year of commit activity
    R 3 3 11 0 Updated Jan 9, 2026
  • Ce_geneAnno-sh Public

    This repository contains the scripts used to assess the presence/absence of Caenorhabditis elegans ref genome genes across all wild strains. Genes are classified as "core", "soft-core", "rare", or "private" based on the frequency at which they occur in wild strains.

    AndersenLab/Ce_geneAnno-sh’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Jan 9, 2026
  • post-gatk-nf Public

    Subset isotype-only vcf, build tree etc. steps after variant calling and isotype assignment

    AndersenLab/post-gatk-nf’s past year of commit activity
    Nextflow 2 1 0 0 Updated Jan 8, 2026
  • nemascan-sims-nf Public

    Nextflow workflow for running GWA simulations

    AndersenLab/nemascan-sims-nf’s past year of commit activity
    Nextflow 0 0 6 0 Updated Dec 16, 2025
  • andersenlab.github.io Public

    Andersen Lab Website

    AndersenLab/andersenlab.github.io’s past year of commit activity
    HTML 2 MIT 3 0 2 Updated Dec 14, 2025
  • fq-processing-nf Public

    A nextflow pipeline for taking raw sequenced reads (fastqs) and performing trimming, species check, alignment, and genotype checking

    AndersenLab/fq-processing-nf’s past year of commit activity
    Nextflow 0 MIT 0 0 0 Updated Nov 18, 2025
  • annotation-nf Public

    Annotate VCF with snpeff and bcsq

    AndersenLab/annotation-nf’s past year of commit activity
    Perl 2 2 4 0 Updated Oct 27, 2025
  • pathogenDiscovery-sh Public

    C. elegans pathogen discovery through taxonomic classification from unaligned wild strains reads

    AndersenLab/pathogenDiscovery-sh’s past year of commit activity
    Shell 0 0 0 0 Updated Oct 25, 2025
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