Skip to content
@DeplanckeLab

Deplancke's Lab

Popular repositories Loading

  1. BRB-seqTools BRB-seqTools Public

    Suite of tools for processing BRB-seq data

    Java 30 9

  2. ASAP ASAP Public

    ASAP : Automated Single-cell Analysis Pipeline

    27 10

  3. ChromatinHD ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    Python 26

  4. Live-seq Live-seq Public

    Live-seq

    R 9 4

  5. Chromatin_modules Chromatin_modules Public

    Chromatin Modules across cell types.The code

    Jupyter Notebook 4

  6. SSPCI SSPCI Public

    Somatic stem and progenitor cell identification based on single-cell RNA-sequencing data

    R 3

Repositories

Showing 10 of 38 repositories
  • ChromatinHD Public

    High-definition modeling of chromatin + transcriptomics data

    DeplanckeLab/ChromatinHD’s past year of commit activity
    Python 26 MIT 0 9 0 Updated Jan 27, 2026
  • asap_web Public

    ASAP container for hosting the web portal

    DeplanckeLab/asap_web’s past year of commit activity
    JavaScript 1 GPL-3.0 0 1 0 Updated Jan 26, 2026
  • scCM Public

    Benchmarking framework for chromatin module detection across bulk and single-cell modalities (semester project, Deplancke Lab, EPFL)

    DeplanckeLab/scCM’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Jan 22, 2026
  • asap_run Public

    ASAP container for running all pipeline code

    DeplanckeLab/asap_run’s past year of commit activity
    Java 0 GPL-3.0 0 2 0 Updated Jan 21, 2026
  • BRB-seqTools Public

    Suite of tools for processing BRB-seq data

    DeplanckeLab/BRB-seqTools’s past year of commit activity
    Java 30 9 0 0 Updated Jan 19, 2026
  • scfair Public

    an initiative to standardize single-cell genomics data and promote findable, accessible, interoperable, and reusable single-cell data.

    DeplanckeLab/scfair’s past year of commit activity
    Ruby 0 0 0 0 Updated Jan 14, 2026
  • TF-seq Public

    Material and source code for TF-seq manuscript

    DeplanckeLab/TF-seq’s past year of commit activity
    Jupyter Notebook 3 CC0-1.0 0 1 0 Updated Jan 13, 2026
  • Neuro_Droso_ND75KD Public

    ND75KD project

    DeplanckeLab/Neuro_Droso_ND75KD’s past year of commit activity
    HTML 0 GPL-3.0 0 0 0 Updated Nov 26, 2025
  • dgrpool_web Public

    DGRPool is a web application designed to serve as a comprehensive repository for Drosophila Genetic Reference Panel (DGRP) phenotyping datasets.

    DeplanckeLab/dgrpool_web’s past year of commit activity
    Ruby 0 GPL-3.0 0 0 0 Updated Oct 9, 2025
  • meSMiLEseq Public

    Material and source code for meSMiLEseq paper

    DeplanckeLab/meSMiLEseq’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Sep 30, 2025
View all repositories

Top languages

Loading…

Most used topics

Loading…