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EGA-archive

European Genome-Phenome Archive

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https://ega-archive.org
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ega-quickview ega-quickview Public

FUSE file system to access EGA files securely and remotely

C 6
crypt4gh crypt4gh Public

GA4GH cryptographic tools

Python 19 15
ega-download-client ega-download-client Public

A Python-based EGA download client

Python 110 52
beacon2-pi-api beacon2-pi-api Public

Beacon v2 Production Implementation (API)

Python 9 11

Repositories

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All C Dockerfile HTML Java JavaScript Nextflow Perl PLpgSQL Python R Rust Shell TypeScript

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Showing 10 of 69 repositories

beacon2-ri-tools-v2 Public

EGA-archive/beacon2-ri-tools-v2’s past year of commit activity

Python 4 Apache-2.0 12 6 0 Updated Jan 27, 2026
AF_bcftools_pipeline Public
Pipeline to run QC and calculate AFs stratified by sex and ancestry using bcftools

EGA-archive/AF_bcftools_pipeline’s past year of commit activity

Nextflow 0 0 0 0 Updated Jan 27, 2026
beacon2-pi-api Public
Beacon v2 Production Implementation (API)

EGA-archive/beacon2-pi-api’s past year of commit activity

Python 9 Apache-2.0 11 0 0 Updated Jan 27, 2026
beacon-ri-documentation Public

EGA-archive/beacon-ri-documentation’s past year of commit activity

TypeScript 0 Apache-2.0 1 0 0 Updated Jan 26, 2026
beacon-template-ui Public

EGA-archive/beacon-template-ui’s past year of commit activity

JavaScript 3 Apache-2.0 6 2 0 Updated Jan 26, 2026
EGA-beacon-browser Public

EGA-archive/EGA-beacon-browser’s past year of commit activity

HTML 0 Apache-2.0 0 0 0 Updated Jan 14, 2026
LocalEGA-inbox Public
OpenSSH dropbox, with remote user credentials and notifications for file system events

EGA-archive/LocalEGA-inbox’s past year of commit activity

Dockerfile 0 Apache-2.0 1 0 0 Updated Jan 12, 2026
LocalEGA-distribution Public
Distribution system for a Federated EGA node

EGA-archive/LocalEGA-distribution’s past year of commit activity

C 0 Apache-2.0 0 0 0 Updated Jan 12, 2026
refgenDetector Public
Tool to infer the human reference genome used to create an alignment file.

EGA-archive/refgenDetector’s past year of commit activity

Python 1 0 0 0 Updated Jan 12, 2026
ingestionQC Public

EGA-archive/ingestionQC’s past year of commit activity

Shell 0 0 0 0 Updated Jan 12, 2026

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