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Allow users to create new tables via CLI

Status: Open.

#1091 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Dec 15, 2025

Use re2 instead of <code>&lt;regex&gt;</code> in <code>insertion_index.cpp</code>

Status: Open.

#1081 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Dec 3, 2025

Add a typedef for the primitive type for positions

Status: Open.

#1069 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Nov 27, 2025

Sampling 10 samples randomly takes a long time.

Status: Open.

#1056 In GenSpectrum/LAPIS-SILO;

· fhennig opened on Nov 19, 2025

Also error if a user tries to insert invalid insertion positions

bugSomething isn't workingSomething isn't working

documentationImprovements or additions to documentationImprovements or additions to documentation

Status: Open.

#1054 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Nov 6, 2025

SequenceIndex: Make <code>indexing_differences_to_reference_sequence</code> specific to <code>vertical_tile_index</code>

Status: Open.

#1053 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Nov 5, 2025

Make SILO loadable from a single file without <code>boost::archive</code>

Status: Open.

#1050 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Nov 4, 2025

Add Python bindings

Status: Open.

#1049 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Nov 4, 2025

Disallow symbol <code>N</code> in reference

Status: Open.

#1043 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Oct 29, 2025

Documentation of preprocessing_config.yaml

Status: Open.

#1041 In GenSpectrum/LAPIS-SILO;

· anna-parker opened on Oct 24, 2025

Should an ambiguous search for <code>-</code> match for <code>N</code>?

Status: Open.

#1038 In GenSpectrum/LAPIS-SILO;

· Taepper opened on Oct 23, 2025

Frequent errors showing up in benchmarking, introduced in "feat: improve logging in the query_plan" or a bit earlier

Status: Open.

#1035 In GenSpectrum/LAPIS-SILO;

· pflanze opened on Oct 20, 2025