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@JRaviLab

JRaviLab

We develop computational approaches to study microbial genotypes, phenotypes, and diseases. PI: @jananiravi
README.md

Welcome to JRaviLab!

What we do

We develop general-purpose computational approaches that integrate large-scale heterogeneous public datasets that lead to the mechanistic understanding of microbial genotypes, phenotypes, and diseases.

Specifically, we focus on two key questions:

  1. How do we link microbial genotypes to phenotypic traits?
  2. How do we delineate molecular mechanisms underlying host response to infection and discover host-directed therapeutics?

Along with the scientific pursuit involving bugs and drugs (:microbe: + :pill:), we release open data/software and easy-to-use web-servers for wide use by the biomedical community. We also focus on community engagement, education, and outreach (check out our orgs, R-Ladies Aurora, R-Ladies East Lansing, Women+ Data Science, and AsiaR.

Keywords

Computational biology & Bioinformatics | Molecular evolution & phylogeny | Comparative pathogenomics | Molecular drug/vaccine discovery | Microbial pathogenesis | Infectious diseases | Data analysis & visualization

(Recent) Favorite pathogens & zoonotic infections

Mycobacteria | ESKAPE pathogens (incl. Staph, Pseudomonas) | Bacillus anthracis | Spirobacilli | Legionella | Listeria

Is your favorite 🦠/disease is missing? reach out to us! 👇

Learn more about us

Pinned Loading

  1. connectivity_scores connectivity_scores Public

    Review on 'Reconciling Multiple Connectivity Scores for Drug Repurposing.'

    HTML 5 2

  2. phage_defense_avcd phage_defense_avcd Public

    Companion repo to the paper titled: 'A broadly conserved deoxycytidine deaminase protects bacteria from phage infection,' by Severin*, Hsueh*, et al., 2021.

    HTML

  3. dcia_evolution dcia_evolution Public

    Data and analysis for the DciA evolution manuscript | StallingsLab & JRaviLab

    R

  4. inlp_listeria inlp_listeria Public

    Companion repository to the Internalin P Listeria manuscript | HardyLab & JRaviLab

    1

  5. lab_docs lab_docs Public

    Documents related to Lab setup, onboarding, offboarding, resources, and such...

    R 3

Repositories

Showing 10 of 31 repositories
  • amRdata Public

    Houses the AMR data package

    JRaviLab/amRdata’s past year of commit activity
    R 0 0 0 1 Updated Jan 21, 2026
  • amRshiny Public

    Houses the AMR Shiny package

    JRaviLab/amRshiny’s past year of commit activity
    R 0 0 1 0 Updated Jan 21, 2026
  • amRml Public

    Houses the AMR ML and post-ML package

    JRaviLab/amRml’s past year of commit activity
    R 0 0 0 2 Updated Jan 21, 2026
  • molevolvr2.0 Public

    WIP new molevolvr app

    JRaviLab/molevolvr2.0’s past year of commit activity
    TypeScript 1 10 2 0 Updated Jan 21, 2026
  • amR Public

    amR package suite: 1) amRdata, 2) amRml, 3) amRshiny

    JRaviLab/amR’s past year of commit activity
    R 0 1 0 1 Updated Jan 20, 2026
  • MolEvolvR Public

    An R Package for characterizing proteins using molecular evolution and phylogeny

    JRaviLab/MolEvolvR’s past year of commit activity
    R 6 14 31 (3 issues need help) 12 Updated Dec 19, 2025
  • bacteria-archaea-traits Public Forked from bacteria-archaea-traits/bacteria-archaea-traits

    A synthesis of bacterial and archaeal phenotypic trait data | forked from bacteria-archaea-traits | Madin 2020

    JRaviLab/bacteria-archaea-traits’s past year of commit activity
    R 0 12 0 1 Updated Dec 18, 2025
  • lab_docs Public

    Documents related to Lab setup, onboarding, offboarding, resources, and such...

    JRaviLab/lab_docs’s past year of commit activity
    R 0 CC0-1.0 3 0 0 Updated Dec 18, 2025
  • compbio-gists Public

    Computational Biology & Bioinformatics Resources

    JRaviLab/compbio-gists’s past year of commit activity
    Shell 16 MIT 4 0 0 Updated Sep 9, 2025
  • jravilab.github.io Public

    Janani Ravi's Research Group

    JRaviLab/jravilab.github.io’s past year of commit activity
    HTML 1 5 0 0 Updated Aug 25, 2025
View all repositories

Most used topics

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