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Reproducibility in cellNexusPy

Status: Open.

#74 In MangiolaLaboratory/cellNexus;

· jdhenaos opened on Dec 9, 2025

optmising cell_id

Status: Open.

#72 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Nov 21, 2025

id dplyr is not loaded cellNexus fails

Status: Open.

#70 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Nov 12, 2025

get_pseudobulk error

Status: Open.

#69 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Nov 12, 2025

get_metacell and get_pseudobulk return warnings instead of errors

Status: Open.

#67 In MangiolaLaboratory/cellNexus;

· myushen opened on Nov 3, 2025

alive should be T or F

Status: Open.

#65 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Oct 17, 2025

Progress bar for object creation

Status: Open.

#60 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Sep 15, 2025

implement "left_join" version of the parquet to reduce size

Status: Open.

#56 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Aug 29, 2025

Robust unit testing for differences in updated metadata

Status: Open.

#52 In MangiolaLaboratory/cellNexus;

· myushen opened on Jun 2, 2025

Submit to Bioconductor

Status: Open.

#42 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Mar 19, 2025

Add annotation columns to metadata (within step 3)

Status: Open.

#27 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Jan 17, 2025

Improve performance of reading many files

Status: Open.

#18 In MangiolaLaboratory/cellNexus;

· stemangiola opened on Dec 18, 2024