update ligandnetwork generation notebooks #274
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Some migration from OpenFreeEnergy/konnektor#200, but generally minor changes. |
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related: OpenFreeEnergy/gufe#692 and OpenFreeEnergy/openfe#1750 |
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View / edit / reply to this conversation on ReviewNB jthorton commented on 2026-01-08T11:38:30Z Do we want some more details on what we are trying to show in the notebook, it might be good so users can quickly tell if this is relevent to them, we also might want to point to the konnector docs for more examples and details on the networks available. atravitz commented on 2026-01-09T17:14:57Z ah, I missed carrying over the title cell from konnektor! and now that I'm looking at this again, I think maybe it should actually live in konnektor docs with kartograf as a dep only for the tutorial notebooks. IAlibay commented on 2026-01-09T17:39:52Z I think either way works tbh - we want to encourage folks to use konnektor, so whichever is easiest! atravitz commented on 2026-01-09T21:58:39Z okay, let's keep it here so that konnektor is completely independent of kartograf for now! |
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ah, I missed carrying over the title cell from konnektor! and now that I'm looking at this again, I think maybe it should actually live in konnektor docs with kartograf as a dep only for the tutorial notebooks. View entire conversation on ReviewNB |
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I think either way works tbh - we want to encourage folks to use konnektor, so whichever is easiest! View entire conversation on ReviewNB |
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aside from josh's comments - this looks good to me
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okay, let's keep it here so that konnektor is completely independent of kartograf for now! View entire conversation on ReviewNB |
related to: OpenFreeEnergy/konnektor#169
and OpenFreeEnergy/konnektor#200