Skip to content

@ workflow : updated. #40

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Merged
elmbeech merged 5 commits into from
Oct 23, 2025
Merged

@ workflow : updated. #40

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
5 commits
Select commit Hold shift + click to select a range
3c93734
@ workflows : update os yml files.
elmbeech Oct 23, 2025
92f0b31
@ workflows : update os yml files.
elmbeech Oct 23, 2025
863decb
@ workflows : setting the matplotlib backend explicitely.
elmbeech Oct 23, 2025
f010635
@ workflows : test update.
elmbeech Oct 23, 2025
ade9086
@ worflows : enable python 3.10, 3.11, 3.12, 3.13.
elmbeech Oct 23, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
3 changes: 2 additions & 1 deletion .github/workflows/apple.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@ jobs:
python-version: ["3.10", "3.11", "3.12", "3.13"]

env:
MPLBACKEND: Agg # https://github.com/orgs/community/discussions/26434
PYTHONPATH: /Users/runner/work/physicelldataloader/physicelldataloader

steps:
Expand All @@ -33,7 +34,7 @@ jobs:
run: |
brew install ffmpeg imagemagick
python -m pip install --upgrade pip
python -m pip install flake8 pytest anndata bioio matplotlib numpy pandas requests scipy vtk
python -m pip install flake8 pytest anndata bioio bioio-ome-tiff matplotlib neuroglancer numpy pandas requests scikit-image scipy vtk
python -m pip install /Users/runner/work/physicelldataloader/physicelldataloader -v
#if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: lint with flake8
Expand Down
3 changes: 2 additions & 1 deletion .github/workflows/linux.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@ jobs:
python-version: ["3.10", "3.11", "3.12", "3.13"]

env:
MPLBACKEND: Agg # https://github.com/orgs/community/discussions/26434
PYTHONPATH: /home/runner/work/physicelldataloader/physicelldataloader

steps:
Expand All @@ -33,7 +34,7 @@ jobs:
run: |
sudo apt install ffmpeg imagemagick
python -m pip install --upgrade pip
python -m pip install flake8 pytest anndata bioio matplotlib numpy pandas requests scipy vtk
python -m pip install flake8 pytest anndata bioio bioio-ome-tiff matplotlib neuroglancer numpy pandas requests scikit-image scipy vtk
python -m pip install /home/runner/work/physicelldataloader/physicelldataloader -v
#if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
- name: lint with flake8
Expand Down
3 changes: 2 additions & 1 deletion .github/workflows/windows.yml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -21,6 +21,7 @@ jobs:
python-version: ["3.10", "3.11", "3.12", "3.13"]

env:
MPLBACKEND: Agg # https://github.com/orgs/community/discussions/26434
PYTHONPATH: D:\a\physicelldataloader\physicelldataloader

steps:
Expand All @@ -33,7 +34,7 @@ jobs:
run: |
choco install ffmpeg imagemagick
python -m pip install --upgrade pip
python -m pip install flake8 pytest anndata bioio matplotlib numpy pandas requests scipy vtk
python -m pip install flake8 pytest anndata bioio bioio-ome-tiff matplotlib neuroglancer numpy pandas requests scikit-image scipy vtk
python -m pip install D:\a\physicelldataloader\physicelldataloader -v
#echo 'set PYTHONPATH=D:\a\physicelldataloader\physicelldataloader' >> $GITHUB_ENV
#if [ -f requirements.txt ]; then pip install -r requirements.txt; fi
Expand Down
Loading