DxNextflowPG

Nextflow workflow to analyse pharmacogenetics NGS data.

UMCU HPC

export NXF_JAVA_HOME='/hpc/diaggen/software/tools/jdk-18.0.2.1/'
tools/nextflow run DxNextflowPG --input <input_path> --outdir <output_path> --email <email> -resume

Development

Install nf-core and Nextflow

python3 -m venv venv
source venv/bin/activate
pip install --upgrade pip
pip install nf-core

curl -s https://get.nextflow.io | bash
mv nextflow venv/bin/