Setup of soil heat conductivity calibration from monitoring data

Input variables:

• Trees $tree: smrk, buk, modrin
• Locations $loc: loc1, loc2, loc3
• Scenarios $swc: low, mid, high
  Input data in form of .csv files containing temperature evolution for each tree type and locations has to be provided in a folowing format:

dataIN/  
├── buk  
│   ├── output_loc1_buk_subsoil.csv  
│   ├── output_loc1_buk_topsoil.csv  
│   ├── output_loc2_buk_subsoil.csv  
│   ├── output_loc2_buk_topsoil.csv  
│   ├── output_loc3_buk_subsoil.csv  
│   └── output_loc3_buk_topsoil.csv  
├── modrin  
│   ├── output_loc1_modrin_subsoil.csv  
│   ├── output_loc1_modrin_topsoil.csv  
│   ├── output_loc2_modrin_subsoil.csv  
│   ├── output_loc2_modrin_topsoil.csv  
│   ├── output_loc3_modrin_subsoil.csv  
│   └── output_loc3_modrin_topsoil.csv  
└── smrk  
    ├── output_loc1_smrk_subsoil.csv  
    ├── output_loc1_smrk_topsoil.csv  
    ├── output_loc2_smrk_subsoil.csv  
    ├── output_loc2_smrk_topsoil.csv  
    ├── output_loc3_smrk_subsoil.csv  
    └── output_loc3_smrk_topsoil.csv  

User has two ways to obtain calibration results

Manual

1. Prepare simulation input data for desired tree type and location
   ./prepData.sh tree loc
   • prepInputs tree loc
   • prepInitTemp tree loc
   • calcHeatCapacity tree loc
2. Prepare DRUtES configurations for each soil moisture scenario
   ./prepSimConf.sh swc
3. Perform model calibration
   python3 heatConductOpt.py tree loc swc
4. Visualize simulated data
   python3 genPlotMulti.py tree loc swc
5. Repeat step 2. - 4. for each scenario
6. Clean configurations between each location
   ./cleanTree

Semi-Automatic

Executes model calibration for given tree type, soil moisture scenario and model complexity
./tree_sim.sh tree opt mod

• opt:
  • low - all loc low swc only
  • mid - all loc mid swc only
  • high - all loc high swc only
  • all - all loc all swc
• mod:
  • 1 - conduction only
  • 2 - conduction + convection
  • 3 - conduction + source
  • 4 - conduction + convection + source

Both ways should yield figures and simul.h5 file which contain soil conductivities.