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daniil-11-ger/README.md

Hi, I'm Daniil 👋

Biotechnology Student | 3rd Year | Bioinformatics Enthusiast

I specialize in genome assembly, automated pipelines, and laboratory software development.

Featured Projects

Plant Genome Assembly (Rice)

  • Focus: Eukaryotic genome reconstruction using PacBio HiFi reads.
  • Tools: Hifiasm, Jellyfish, RagTag, Augustus.
  • Key Skill: Scaffolding and organelle sorting.

Biotech Lab Assistant (GUI)

  • Focus: Python desktop tools for routine lab calculations.
  • Features: Tm calculation (Wallace Rule), DNA-to-RNA transcription.
  • Key Skill: Python Software Development.

Bacterial Assembly Pipeline

  • Focus: Automated workflow for E. coli genome assembly.
  • Tools: fastp, SPAdes, Prokka, QUAST.

Tech Stack

  • Bioinformatics: Bash Scripting, Conda, HPC, SRA-tools.
  • Development: Python (Tkinter), Git/GitHub.
  • Domain: PCR Design, Genomic Annotation, Molecular Biology.

Connect with me: LinkedIn

Popular repositories Loading

  1. Daniil-Gerassimov Daniil-Gerassimov Public

  2. Daniil-Gerassimov- Daniil-Gerassimov- Public

  3. Bioinformatics-Bash-Workflows Bioinformatics-Bash-Workflows Public

  4. bacterial-genome-assembly bacterial-genome-assembly Public

    End-to-end automated bioinformatics pipeline for bacterial genome assembly and functional annotation (SRR35523993).

    Shell

  5. oryza-sativa-genome-assembly oryza-sativa-genome-assembly Public

    Advanced plant genome assembly pipeline for Oryza sativa using HiFi reads, k-mer profiling (Jellyfish), and Hifiasm

    HTML

  6. biotech-gui-tools biotech-gui-tools Public

    Python-based GUI application for laboratory calculations (DNA analysis, Tm calculation, and molarity)

    Python