Edit ADRIA.Domain() and generalize to incorporate loading of GBR-wide domain package

[eco-ben]

Minor changes required to generalize code away from reef cluster/site level Domains and allow GBR-wide ADRIADomains to be accepted.

[DanTanAtAims]

I can fix the rest of the issues if you would like.

Line 916, (not edited in the pull request), assumes a column named cluster_id is in the geopackage. It should be getting the column name from the environmental layer.

If not DHW is initially loaded, sampling will assume there are 50 dhw scenarios when there are only 10.

Cyclones are loaded as categories and need to be converted to mortalities.

[eco-ben]

Cyclones are loaded as categories and need to be converted to mortalities.

Thanks Dan. Does this mean that currently cyclones are not going to be correctly applied as they are in the Moore scale domain runs?

[eco-ben]

Cyclones are loaded as categories and need to be converted to mortalities.

Thanks Dan. Does this mean that currently cyclones are not going to be correctly applied as they are in the Moore scale domain runs?

I see now the .nc data is cyclone category data from RME. Does this have to be converted to mortality values using methods in rrap_dg package before it can be used in ADRIADomain runs?
I will continue using my GBR-wide ADRIADomain running with 0 cyclone mortality for now.

[DanTanAtAims]

@ConnectedSystems

Should be ready for final review. The domain is available on teams in the ADRIA Domain Data folder called GBR_2024_10_15

dom = ADRIA.load_domain("path")

In the end I decided to convert the cyclones categories to mortality's outside of ADRIA, so that when we eventually update the domain with different cyclone data, it doesn't need to be cyclone categories.