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@StatBiomed Statistical learning for Biomedicine

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    33 repositories

    • HKUbioinfoNet

      Public
      HKU Bioinformatics Seminars
      0•2•0•0•Updated Jan 6, 2026Jan 6, 2026

    • TemporalVAE-reproducibility

      Public
      Python
      •0•4•0•0•Updated Dec 18, 2025Dec 18, 2025

    • statbiomed.github.io

      Public
      GitHub page of statistical learning for biomedicine
      CSS
      •1•0•0•0•Updated Dec 14, 2025Dec 14, 2025

    • HLab-pubmon

      Public
      Publication monitoring at Huang Lab
      TeX
      •9•6•0•0•Updated Dec 3, 2025Dec 3, 2025

    • FineST

      Public
      Jupyter Notebook
      •
      Apache License 2.0
      •2•9•0•0•Updated Dec 2, 2025Dec 2, 2025

    • xDecoder

      Public
      Assessing large-scale genomic language models in predicting personal gene expression: promises and limitations
      Python
      •
      MIT License
      •1•5•0•0•Updated Nov 27, 2025Nov 27, 2025

    • sbms-server

      Public
      School of Biomedical Sciences (HKU) server wiki repository
      6•5•0•3•Updated Nov 24, 2025Nov 24, 2025

    • BMDS-book

      Public
      Biomedical Data Science book
      case-studiesr-programmingbiomedical-data-science
      HTML
      •
      Creative Commons Zero v1.0 Universal
      •4•8•0•1•Updated Nov 21, 2025Nov 21, 2025

    • SNPmanifold

      Public
      Manifold learning for single-cell single-nucleotide genetic variations
      single-cellmanifold-learninggenetic-variantsvariational-autoencoder
      Jupyter Notebook
      •
      Apache License 2.0
      •0•4•0•0•Updated Oct 23, 2025Oct 23, 2025

    • promoter_activity

      Public
      This repository includes codes plotting figures in "Alternative promoter during mammalian organ development"
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 21, 2025Sep 21, 2025

    • inDecay

      Public
      Cell type-aware CRISPR editing outcomes prediction
      Jupyter Notebook
      •
      Apache License 2.0
      •0•0•0•0•Updated Sep 19, 2025Sep 19, 2025

    • TemporalVAE

      Public
      TemporalVAE: dual-objective VAE for time prediction in single cells
      variational-autoencodersingle-cell-rna-seqtime-predictiontime-series-scrnaseqsingle-cell-atlas
      Python
      •
      BSD 3-Clause "New" or "Revised" License
      •0•11•2•0•Updated Sep 13, 2025Sep 13, 2025

    • SpatialDM

      Public
      Spatial direct messaging detected by bivariate Moran
      spatial-transcriptomicsspatial-correlationcell-cell-communicationligand-receptor-interaction
      Jupyter Notebook
      •
      Apache License 2.0
      •6•32•15•1•Updated Jul 16, 2025Jul 16, 2025

    • clonaltrans

      Public
      Estimation of clone-specific dynamical transition rate
      Jupyter Notebook
      •
      MIT License
      •0•4•0•0•Updated Jul 5, 2025Jul 5, 2025

    • Embryo2live

      Public
      Jupyter Notebook
      •1•0•0•0•Updated Jul 1, 2025Jul 1, 2025

    • scTail

      Public
      Detection and quantify alternative polyA site
      Jupyter Notebook
      •
      Apache License 2.0
      •0•3•3•0•Updated Jun 28, 2025Jun 28, 2025

    • LogisticGLM

      Public
      Implementation of logistic regression and basic neural network
      0•0•0•0•Updated Jun 24, 2025Jun 24, 2025

    • DNA-AI-hackathon

      Public
      DNA AI Hackathon
      Jupyter Notebook
      •0•1•0•0•Updated Apr 2, 2025Apr 2, 2025

    • stemVAE_endometrium

      Public
      Version: alph; Time: 231128; Owner: awa121
      Python
      •
      MIT License
      •0•2•0•0•Updated Jan 19, 2025Jan 19, 2025

    • UniTVelo

      Public
      UniTVelo, Temporally Unified RNA Velocity for single cell trajectory inference
      velocityinferencernatranscriptomicstrajectory
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •9•27•2•0•Updated Nov 12, 2024Nov 12, 2024

    • CRAK-Velo

      Public
      Jupyter Notebook
      •
      BSD 3-Clause "New" or "Revised" License
      •2•4•0•0•Updated Sep 16, 2024Sep 16, 2024

    • HKSingleCell2022

      Public
      Workshop on single cell data science 2022
      conference-websitesingle-cell-data-science
      0•0•0•0•Updated May 29, 2024May 29, 2024

    • CamoTSS

      Public
      Detection and couting alternative TSS in single cells
      Jupyter Notebook
      •
      Apache License 2.0
      •4•16•7•0•Updated Apr 21, 2024Apr 21, 2024

    • BBMix

      Public
      Inference of Beta-binomial mixture model
      Python
      •
      Apache License 2.0
      •1•3•1•0•Updated Oct 11, 2023Oct 11, 2023

    • NegabinGLM

      Public
      NegabinGLM: Negative-binomial regression model
      Jupyter Notebook
      •0•0•0•0•Updated Jul 18, 2023Jul 18, 2023

    • SpatialCV

      Public
      Spatial Co-Variable gene pair analysis
      Python
      •
      Apache License 2.0
      •1•0•0•0•Updated Nov 8, 2022Nov 8, 2022

    • BetabinGLM

      Public
      Beta-binomial regression model
      Python
      •
      Apache License 2.0
      •0•0•0•0•Updated Nov 2, 2022Nov 2, 2022

    • GLM-hackathon

      Public
      Hackathon on GLM implementation for summer internship
      Jupyter Notebook
      •1•0•0•0•Updated Jul 30, 2022Jul 30, 2022

    • HKU-single-cell-workshop

      Public
      Single-cell analysis workshop at HKU
      3•7•0•0•Updated Jul 25, 2022Jul 25, 2022

    • scRNA-efficiency-prediction

      Public
      Prediction of RNA splicing kinetics in scRNA-seq data
      Python
      •1•2•0•0•Updated May 3, 2022May 3, 2022