70 metabolomics data

[alexgrent]

No description provided.

[jgriss]

While this PR contains the required changes in the API "frontend", the support in the analysis code is still missing.

[alexgrent]

@jgriss How is the analysis code affected?
Do you mean the swagger models used? If yes updated with the last commit.

[EliotRagueneau]

Looking good to me, but Johannes will know better if something is missing

[EliotRagueneau]

Maybe it would be better to not start the description with the identifier. It should follow the same structure as other example definitions in my opinion. (Not a bad idea to add the dientifier though, but maybe more at the end, it's more inviting to read)

[alexgrent]

Done

[alexgrent]

About the analysis code:

• Metabolomics data is mainly generated by Mass spec which we can already handle as a data format.
  In some cases NMR spectroscopy is used this is only a minority (181 out of 1611 in the Metabolights database)
• In general Pathway analysis using ORA algorithms such as PADOG and CAMERA is possible and we would be able to integrate it in our existing workflow
• Still it is not possible to use Mass spec metabolomics datasets in reactomeGSA with our existing algorithms.
  -> not enough Metabolomic KEGG identifier are represented in Reactome

[jgriss]

One additional important note: Need to check whether this requires different internal mapping files (currently UniProt and ENSEMBL are directly supported)