Welcome to the website and github repository for the Genome Analysis Module. This website will guide the learning experience for trainees in the UBC MSc Genetic Counselling Training Program, as they embark on a journey to learn about analyzing genomes.

Software for the analysis and visualization of site-saturation mutagenesis experiments

✂️ Trim sequencing adapters from NGS data automatically

A modernized ART for Illumina read simulation.

"Applied bioinformatics" is a course for Genetics Master Program at Genetics Department

Generate Lorenz plots and Coverage plots directly from BAM files

ICGC ARGO DNA-Seq Processing Workflow

Collection of Dockerfiles for bioinformatics tools

Detect RNA contamination in human Illumina DNA-seq experiments

A pipeline for the detection of Cas genes and CRISPR arrays from unassembled raw illumina sequencing reads

CLARK: Fast, accurate and versatile sequence classification system (Bioinformatics/Genomics/Metagenomics)

This is a repository for a pipeline used to identify imprinted genes or allele specific expressions using Illumina next generation sequencing (NGS) platform. This repository contains a work in progress to identify imprinted genes in polyploid species.

R Shiny app encapsulating FilLT3r tool : https://doi.org/10.1186/s12859-022-04983-6

This tool is designed to scan all positions on a gene than can be used to specifically cut one DNA strand using a given cas9.

Privacy-focused, open-source tool to analyze raw DNA files (from 23andMe, MyHeritage, AncestryDNA, etc.) directly in your browser. Unlock free insights on health risks, personality traits, metabolism, and more — no data upload required

DNA-seq Data process (example from real case)

My Jupyter notebooks for working with bioinformatics data

R Shiny app for somatic genomic variants interpretation. The tool suite to deal with the underlying local structured database is provided here : https://github.com/clbenoit/SomaVarDBTools

Program extracts a valuable information from an output vecscreen file