Framework for the rapid modeling glycans and glycoproteins.

The Swiss Army knife for carbohydrate structure validation, refinement and analysis

The Python software re-glycosylates protein structures using MD simulation results from the glycoshape database. It takes alphafold protein structures as input and outputs modified structures with glycans added at appropriate sites.

CWL workflow that facilitate performing a series of structural and phenotype related third party prediction methods starting from either a protein FASTA file or a list of Uniprot IDs. Integrated prediction methods refer to secondary structure, solvent accessibility, disordered regions, PTS modifications (phosphorylation, glycosylation, lipid mod…

Code and datasets for the publications "Predicting O-GlcNAcylation sites in mammalian proteins with transformers and RNNs trained with a new loss function" and "Recurrent Neural Network-based Prediction of O-GlcNAcylation Sites in Mammalian Proteins"

This is a Java stand-alone tool for the quantitation of glyco sites. It calculates the proportion of different glyco-PTMs in a protein of interest. It supports data from IP2 (quant compare output files) and MaxQuant.

Code and datasets for the publication "Linear and Neural Network Models for Predicting N-glycosylation in Chinese Hamster Ovary Cells Based on B4GALT Levels"

Repository which is related to GlyCovid project.

The JavaScript widget used to visualize the relationship among them

Repository which is related to GlycanBind project.

Find glycopeptide peptide sequences in protein FASTA files.