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All stat and plot generation functions #3

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All stat and plot generation functions #3

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@AbhirupaGhosh AbhirupaGhosh commented Jan 21, 2026

Description

What kind of change(s) are included?

  • Feature (adds or updates new capabilities)
  • Bug fix (fixes an issue).
  • Enhancement (adds functionality).
  • Breaking change (these changes would cause existing functionality to not work as expected).

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Please ensure that all boxes are checked before indicating that this pull request is ready for review.

  • I have read and followed the CONTRIBUTING.md guidelines.
  • I have searched for existing content to ensure this is not a duplicate.
  • I have performed a self-review of these additions (including spelling, grammar, and related).
  • I have added comments to my code to help provide understanding.
  • I have added a test which covers the code changes found within this PR.
  • I have deleted all non-relevant text in this pull request template.
  • Reviewer assignment: Tag a relevant team member to review and approve the changes.

@AbhirupaGhosh AbhirupaGhosh self-assigned this Jan 21, 2026
epbrenner and others added 2 commits January 20, 2026 17:42
@epbrenner
Revised markdown code to fix weird formatting
b0e7ead 
Updated the Markdown design because the tables were coming out as weird piles of spaghetti instead. Added a helper function to simplify some of the repeated operations. Added new package to DESCRIPTION file. Plots have issues with labels clipping out of view, TBA.
@AbhirupaGhosh
Replace 'antibiotic' with 'drug_abbr' in plots
bf44340
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@jananiravi jananiravi Awaiting requested review from jananiravi

@epbrenner epbrenner Awaiting requested review from epbrenner

@charmvang charmvang Awaiting requested review from charmvang

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@AbhirupaGhosh @epbrenner